Replace VarSets by SmallSet<size_t> where appropriate, in order to minimize the use of FactorGraph::findVar().

Improve SWIG interfaces and merge their build process with the main build process

Clean up code

Consider using a priority_queue for maximum residual schedule

The "MinFill" and "WeightedMinFill" variable elimination heuristics seem designed for Markov graphs; add similar heuristics which are designed for factor graphs.

Member dai::BP::setProperties (const PropertySet &opts)

Make DAI_BP_FAST a compile-time choice, as it is a memory/speed tradeoff

Member dai::CBP::getInfAlg ()

At present, CBP::getInfAlg() only returns a BP instance; it should be possible to select other inference algorithms via a property

Class dai::ClusterGraph

Remove the _vars and _clusters variables and use only the graph and a contextual factor graph.

Class dai::CobwebGraph

Implement unit test for Cobwebgraph

Member dai::CobwebGraph::Connection::newmsg

Remove CobwebGraph::Connection::newmsg

Class dai::FactorGraph

Write a method that applies evidence (should we represent evidence as a map<Var,size_t> or as a map<size_t,size_t>?)

Class dai::FBP

Add nice way to set weights

Author: Frederik Eaton

Class dai::TFactor< T >

Define a better fileformat for .fg files (maybe using XML)?

Add support for sparse factors.

Class dai::TRWBP

Merge code of FBP and TRWBP

Member dai::TRWBP::nrtrees

See if there is a way to wrap TRWBP::nrtrees in a props struct together with the other properties currently in TRWBP::props (without copying al lot of BP code literally)

File emalg.h

Implement parameter estimation for undirected models / factor graphs.

File glc.h

Fix the init of GLC

File hak.h

Use ClusterGraph instead of a vector<VarSet> for speed.

Optimize this code for large factor graphs.

Implement GBP parent-child algorithm.

File treeep.h

Clean up the TreeEP code (exploiting that a large part of the code is just a special case of JTree).

File weightedgraph.h

Improve general support for graphs and trees (in particular, a good tree implementation is needed).